I recently had a support chat about this issue and had this reply that would seem relevant to this request:
In linnworks it would not be possible to assign a specific price to an FBM and an FBA channel SKU's if the SKU they are linked to in Linnworks are identical. The only way of sending different price for your FBA offer and an FBM offer would be to actually have 2 separate SKU's in Linnworks. This way you will be able to utilize the 'Price By Channel' functionality. We can send prices to different subsources, but not to different channelSKU's if its linked to the same Linnworks SKU I'm afraid. Its a limitation in the structure and re-doing this would mean us overwriting half of Linnworks' functionality.
in case this sku is just FBA you may indeed use the Price by Channel functionality
please refer to this article for further details: https://help.linnworks.com/support/solutions/articles/7000023899-listing-descriptions-different-prices-titles-and-descriptions-for-different-channels
"Its a limitation in the structure and re-doing this would mean us overwriting half of Linnworks' functionality."
We would like the functionality of being able to set specific Amazon FBA and FBM prices for the same SKU when listed through LinnWorks.net
We would like this feature so that we can pass the cost saving of shipping from our own warehouse vs shipping from FBA onto the customer and therefore make our FBM listings more attractive.
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